To cite the porridge package in publications please use:

van Wieringen, W.N. (2024) porridge: Ridge-Type Estimation of a Potpourri of Models. R package version 0.3.3. https://CRAN.R-project.org/package=porridge

Aflakparast, M., de Gunst, M.C.M., van Wieringen, W.N. (2018). Reconstruction of molecular network evolution from cross-sectional omics data. Biometrical Journal, 60(3), 547-643

van Wieringen, W.N. (2019). The generalized ridge estimator of the inverse covariance matrix. Journal of Computational and Graphical Statistics, 28(4), 932-942.

van Wieringen, W.N. (2019). Lecture notes on ridge regression. arXiv preprint, arXiv:1509.09169.

van Wieringen, W.N., Binder, H. (2022). Sequential learning of regression models by penalized estimation. Journal of Computational and Graphical Statistics, accepted.

van Wieringen, W.N., Chen, Y. (2021). Penalized estimation of the Gaussian graphical model from data with replicates. Statistics in Medicine, 40(19), 4279-4293

van Wieringen, W.N., Stam, K.A., Peeters, C.F.W., van de Wiel, M.A. (2020). Updating of the Gaussian graphical model through targeted penalized estimation.Journal of Multivariate Analysis, 178, article 104621

Corresponding BibTeX entries:

  @Manual{,
    title = {porridge: Ridge-Type Estimation of a Potpourri of Models},
    author = {W. N. {van Wieringen} and M. Aflakparast},
    year = {2024},
    note = {R package version 0.3.3},
    url = {https://CRAN.R-project.org/package=porridge},
  }

  @Article{,
    title = {Reconstruction of molecular network evolution from
      cross-sectional omics data},
    author = {M. Aflakparast and M. C. M. {de Gunst} and W. N. {van
      Wieringen}},
    journal = {Biometrical Journal},
    volume = {60},
    number = {3},
    pages = {547-563},
    year = {2018},
  }

  @Article{,
    title = {The generalized ridge estimator of the inverse covariance
      matrix},
    author = {W. N. {van Wieringen}},
    journal = {Journal of Computational and Graphical Statistics},
    volume = {28},
    number = {4},
    pages = {932-942},
    year = {2019},
  }

  @Book{,
    title = {Lecture notes on ridge regression},
    author = {W. N. {van Wieringen}},
    journal = {Arxiv preprint},
    volume = {arXiv:1509.09169},
    year = {2021},
    publisher = {Arxiv},
  }

  @Article{,
    title = {Sequential learning of regression models by penalized
      estimation},
    author = {W. N. {van Wieringen} and H. Binder},
    journal = {Journal of Computational and Graphical Statistics},
    year = {2022},
  }

  @Article{,
    title = {Penalized estimation of the Gaussian graphical model from
      data with replicates},
    author = {W. N. {van Wieringen} and Y. Chen},
    journal = {Statistics in Medicine},
    volume = {40},
    number = {19},
    pages = {4279-4293},
    year = {2021},
  }

  @Article{,
    title = {Updating of the Gaussian graphical model through targeted
      penalized estimation},
    author = {W. N. {van Wieringen} and K, A, Stam and C. F. W. Peeters
      and M. A. {van de Wiel}},
    journal = {Journal of Multivariate Analysis},
    volume = {178},
    number = {article 104621},
    year = {2020},
  }